PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 322aa    MW: 36160.9 Da    PI: 7.7571
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27100.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.77.3e-3028654128
         NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +ekewy +s rd+ky+tg r+nrat+sgyWkatgkd++v +           +g l+g+kktLvfy+grap+g+kt+Wvmheyrl
  Dca27100.1   2 GEKEWYLYSLRDRKYPTGLRTNRATSSGYWKATGKDRQVNAGsgtgdglsspGGMLIGMKKTLVFYQGRAPRGVKTRWVMHEYRL 86 
                 578*************************************9766665555555555***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.1851110IPR003441NAC domain
SuperFamilySSF1019417.06E-362111IPR003441NAC domain
PfamPF023651.6E-13686IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGEKEWYLYS LRDRKYPTGL RTNRATSSGY WKATGKDRQV NAGSGTGDGL SSPGGMLIGM  60
KKTLVFYQGR APRGVKTRWV MHEYRLDGHF SSFRLSSNKE EWVICRIFHK NGGEKKTTFH  120
PPPLPPLSPF LRHLPPLLDI PTTTTITTTA TSSTSTIQSL EFCNRKPRNN NNNNNNNNNN  180
HYHSDSNFLL QSLLSNPLPN FSSLTDDPTT EFATSSAFPT TTATATSIGH HTPPPPFLFN  240
PLSSRASKQN KSMQQQLMYN HNAFGFSETD NQCHDNENED DNDNDDDVAV NFHMSSSSAD  300
ALDRLIYPSH HMNFAAESWP CH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-29111668171NO APICAL MERISTEM PROTEIN
1ut4_B2e-29111668171NO APICAL MERISTEM PROTEIN
1ut7_A2e-29111668171NO APICAL MERISTEM PROTEIN
1ut7_B2e-29111668171NO APICAL MERISTEM PROTEIN
4dul_A2e-29111668171NAC domain-containing protein 19
4dul_B2e-29111668171NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.18e-47NAC family protein